from vedo import * line = Line([0,0,0], [1,1,1], res=100) seeds = Points([[10,10,10], [100,100,100]]) ################################################ vol = Volume(dataurl+'embryo.tif') tm = TetMesh(dataurl+'limb.vtu') rg = RectilinearGrid(dataurl+'RectilinearGrid.vtr') ################################################ print("\n -- TEST METHOD add_ids() -------------------") print(vol.add_ids()) print(tm.add_ids()) print(rg.add_ids()) print("\n -- TEST METHOD average_size() -------------------") print(vol.average_size()) print(tm.average_size()) print(rg.average_size()) print("\n--- TEST METHOD bounds() -------------------") print(vol.bounds()) print(tm.bounds()) print(rg.bounds()) print("\n -- TEST METHOD cell_centers() -------------------") print(vol.cell_centers().coordinates) print(tm.cell_centers().coordinates) print(rg.cell_centers().coordinates) print("\n -- TEST METHOD cells() -------------------") print(len(vol.cells)) # NORMALLY THIS GIVES WARNING print(len(tm.cells)) print(len(rg.cells)) # NORMALLY THIS GIVES WARNING print("\n -- TEST METHOD center_of_mass() -------------------") print(vol.center_of_mass()) print(tm.center_of_mass()) print(rg.center_of_mass()) print("\n--- TEST METHOD compute_cell_size() -------------------") print(vol.compute_cell_size()) print(tm.compute_cell_size()) print(rg.compute_cell_size()) # print("\n--- TEST METHOD compute_streamlines() -------------------") # print(vol.compute_streamlines(seeds)) # print(tm.compute_streamlines([[100,0,0], [1000,100,1]])) # print(rg.compute_streamlines([[0,0,0], [1,1,1]])) print("\n--- TEST METHOD copy_data_from() -------------------") print(vol.clone().copy_data_from(vol)) print(tm.clone().copy_data_from(tm)) print(rg.clone().copy_data_from(rg)) # print("\n--- TEST METHOD divergence() -------------------") # print(vol.divergence()) # print(tm.divergence()) # print(rg.divergence()) print("\n--- TEST METHOD find_cells_along_line() -------------------") print(vol.find_cells_along_line([0,0,0], [1000,1000,1000])) print(tm.find_cells_along_line([0,0,0], [100,1,1])) print(rg.find_cells_along_line([0,0,0], [10,1,1])) print("\n--- TEST METHOD find_cells_in_bounds() -------------------") print(vol.find_cells_in_bounds(Sphere().bounds())) print(tm.find_cells_in_bounds(Sphere().bounds())) print(rg.find_cells_in_bounds(Sphere().bounds())) print("\n--- TEST METHOD integrate_data() -------------------") print(vol.integrate_data()) print(tm.integrate_data()) print(rg.integrate_data()) print("\n--- TEST METHOD interpolate_data_from() -------------------") print(vol.interpolate_data_from(vol, n=1)) print(tm.interpolate_data_from(vol, n=1)) print(rg.interpolate_data_from(vol, n=1)) print("\n--- TEST METHOD map_cells_to_points() -------------------") print(vol.clone().map_cells_to_points()) print(tm.clone().map_cells_to_points()) print(rg.clone().map_cells_to_points()) print("\n--- TEST METHOD map_points_to_cells() -------------------") print(vol.clone().map_points_to_cells()) print(tm.clone().map_points_to_cells()) print(rg.clone().map_points_to_cells()) print("\n--- TEST METHOD lines() -------------------") print(vol.lines) print(tm.lines) print(rg.lines) print("\n--- TEST METHOD lines_as_flat_array() -------------------") print(vol.lines_as_flat_array) print(tm.lines_as_flat_array) print(rg.lines_as_flat_array) print("\n--- TEST METHOD mark_boundaries() -------------------") print(vol.mark_boundaries()) print(tm.mark_boundaries()) print(rg.mark_boundaries()) print("\n--- TEST METHOD memory_address() -------------------") print(vol.memory_address()) print(tm.memory_address()) print(rg.memory_address()) print("\n--- TEST METHOD memory_size() -------------------") print(vol.memory_size()) print(tm.memory_size()) print(rg.memory_size()) print("\n--- TEST METHOD modified() -------------------") print(vol.modified()) print(tm.modified()) print(rg.modified()) print("\n--- TEST METHOD npoints() -------------------") print(vol.npoints) print(tm.npoints) print(rg.npoints) print("\n--- TEST METHOD ncells() -------------------") print(vol.ncells) print(tm.ncells) print(rg.ncells) print("\n--- TEST METHOD probe() -------------------") print(line.probe(vol)) print(line.probe(tm)) print(line.probe(rg)) print("\n--- TEST METHOD resample_data_from() -------------------") print(vol.clone().resample_data_from(vol)) print(tm.clone().resample_data_from(tm)) print(rg.clone().resample_data_from(rg)) print("\n--- TEST METHOD smooth_data() -------------------") print(vol.smooth_data()) print(tm.smooth_data()) print(rg.smooth_data()) print("\n--- TEST METHOD shrink() -------------------") print(tm.shrink()) print("\n--- TEST METHOD to_mesh() -------------------") print(vol.tomesh()) print(tm.tomesh()) print(rg.tomesh()) print("\n--- TEST METHOD write() -------------------") print(vol.write("test.vti")) print(tm.write("test.vtu")) print(rg.write("test.vtr")) print("\n--- TEST METHOD cut_with_mesh() -------------------") print(tm.cut_with_mesh(Ellipsoid().scale(5))) print(rg.cut_with_mesh(Ellipsoid().scale(5))) print("\n--- TEST METHOD cut_with_plane() -------------------") print(tm.cut_with_plane(normal=(1,1,0), origin=(500,0,0))) print(rg.cut_with_plane(normal=(1,1,0), origin=(0,0,0))) print("\n--- TEST METHOD extract_cells_by_type() -------------------") print(tm.extract_cells_by_type("tetra")) print("\n--- TEST METHOD isosurface() -------------------") print(vol.isosurface()) print(tm.isosurface()) rg.map_cells_to_points() print(rg.isosurface())